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A healthy Microbiome also promotes a more positive outlook. So feeding the community of bacteria can help to improve that as well.
The basic calorie in/out concept always struck me as obviously too simple.
When I found out that the way we determined how many calories was in a given food ingredient, was by actually burning it and measuring the energy output, I knew whole concept was flawed. Our bodies simply don’t “burn” food like that. We don’t shit ash. There can’t be a simple 1:1 correlation.